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| <div style="border: medium solid #ff00ff;margin: 30px 30px;padding: 10px;display:none">
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| Dear refTSS user,<br>
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| Due to routine server maintenance , refTSS server will not be reachable
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| during the following date: <br>
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| <p><b>Date: July, 29th (Mon), 2019 ; Time: 13:00 - 15:00 (Japan Standard Time,
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| GMT+9)</b></p>
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| The server will remain available after the restart. <br>
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| If you have any question please contact us at reftss-help<at>riken.jp .<br>
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| Thank you for using refTSS
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| </div>
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| <!-- add toc 2021.8.11 -->
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| <html>
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| <div id="toc" class="toc"><div class="toctitle" lang="en" dir="ltr"><h2>Contents</h2></div>
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| <ul>
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| <li class="toclevel-1 tocsection-1"><a href="#refTSS:_reference_transcription_start_site"><span class="tocnumber">1</span> <span class="toctext">refTSS: reference transcription start site</span></a>
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| <ul>
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| <li class="toclevel-2 tocsection-2"><a href="#Data_files"><span class="tocnumber">1.1</span> <span class="toctext">Data files</span></a></li>
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| <li class="toclevel-2 tocsection-3"><a href="#UCSC_genome_browser_Track_Hubs"><span class="tocnumber">1.2</span> <span class="toctext">UCSC genome browser Track Hubs</span></a></li>
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| <li class="toclevel-2 tocsection-4"><a href="#Contact"><span class="tocnumber">1.3</span> <span class="toctext">Contact</span></a></li>
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| <li class="toclevel-2 tocsection-5"><a href="http://reftss.clst.riken.jp/reftss/Release_notes"><span class="tocnumber">1.4</span> <span class="toctext">Release notes</span></a></li>
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| </ul>
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| </li>
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| </ul>
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| </div></html>
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| __NOTOC__
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| <!-- add toc end -->
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| = refTSS: reference transcription start site (test) =
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| The refTSS is an annotated reference dataset for transcriptional start sites (TSS) in human and mouse. The dataset is generated by collecting, reprocessing and assembling various public resources.
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| == Data files ==
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| The raw refTSS data files are available at [http://reftss.clst.riken.jp/datafiles the data download page].
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|
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| == UCSC genome browser Track Hubs ==
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| 1- [http://genome.ucsc.edu/cgi-bin/hgHubConnect?hubSearchTerms=refTss refTSS UCSC Genome Browser public track hub description pages]
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| 2- [https://genome.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://reftss.clst.riken.jp/trackhub/hub.txt&genome=hg38&position=lastDbPos Human refTSS track hub]
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| 3- [https://genome.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://reftss.clst.riken.jp/trackhub/hub.txt&genome=mm10&position=lastDbPos Mouse refTSS track hub]
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| == Contact ==
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|
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| If you have any questions or comments, please contact to reftss-help<at>riken.jp . ("<at>" should be replaced with "@")
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|
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| == Please cite refTSS as: ==
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| Abugessaisa, I., Noguchi S, Hasegawa A, Kondo A, Kawaji H, Carninci P, Kasukawa T. (2019). "refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites." J Mol Biol. doi: <html><a href='https://doi.org/10.1016/j.jmb.2019.04.045' target='_blank'>10.1016/j.jmb.2019.04.045.</a></html>
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