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| <div style="border: medium solid #ff00ff;margin: 30px 30px;padding: 10px;display:none">
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| Dear refTSS user,<br>
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| Due to routine server maintenance , refTSS server will not be reachable
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| during the following date: <br>
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| <p><b>Date: July, 29th (Mon), 2019 ; Time: 13:00 - 15:00 (Japan Standard Time,
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| GMT+9)</b></p>
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| The server will remain available after the restart. <br>
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| If you have any question please contact us at reftss-help<at>riken.jp .<br>
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| Thank you for using refTSS.
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| </div>
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| __NOTOC__
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| <div style="border: medium solid #ff00ff;margin: 30px 30px;padding: 10px">
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| We are planning to update the server software in the following schedule:
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| <p style="margin: 10px"><b>Sep 10th (Fri) 15:00 - Sep 17th (Fri) 15:00, 2021 (Japan Standard Time,
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| GMT+9)</b></p>
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| During the software update, the refTSS interface is not available although you can download files. <br>
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| If you have any questions, please contact us at reftss-help<at>riken.jp.
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| </div>
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|
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| = refTSS: reference transcription start site =
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|
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| The refTSS is an annotated reference dataset for transcriptional start sites (TSS) in human and mouse. The dataset is generated by collecting, reprocessing and assembling various public resources.
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| == Data files ==
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| The raw refTSS data files are available at [http://reftss.clst.riken.jp/datafiles the data download page].
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| == UCSC genome browser Track Hubs ==
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| 1- [http://genome.ucsc.edu/cgi-bin/hgHubConnect?hubSearchTerms=refTss refTSS UCSC Genome Browser public track hub description pages]
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| 2- [https://genome.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://reftss.clst.riken.jp/trackhub/hub.txt&genome=hg38&position=lastDbPos Human refTSS track hub]
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| 3- [https://genome.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://reftss.clst.riken.jp/trackhub/hub.txt&genome=mm10&position=lastDbPos Mouse refTSS track hub]
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| == RIKEN MetaDatabase ==
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| The contents of the refTSS resource are also available in [https://metadb.riken.jp/ RIKEN MetaDatabase].
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| ([https://metadb.riken.jp/metadb/db/refTSS https://metadb.riken.jp/metadb/db/refTSS])
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| == Contact ==
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| If you have any questions or comments, please contact to reftss-help<at>riken.jp . ("<at>" should be replaced with "@")
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|
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| == Please cite refTSS as: ==
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| Abugessaisa, I., Noguchi S, Hasegawa A, Kondo A, Kawaji H, Carninci P, Kasukawa T. (2019). "refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites." J Mol Biol. doi: <html><a href='https://doi.org/10.1016/j.jmb.2019.04.045' target='_blank'>10.1016/j.jmb.2019.04.045.</a></html>
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